PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005552-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 507aa    MW: 56024.9 Da    PI: 5.9163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005552-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13361407455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  WALNUT_00005552-RA 361 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 407
                         799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4248233IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-18356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-14360411No hitNo description
PfamPF000101.5E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-18361423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAEKFWLNEE DRAMMESVLG TEACEFLVAS ASENVISNLV TPSGDLGLQQ GLSQLVRRSD  60
WNYAVFWRVV SLKSGSSALI WGDGHFCDPE GGGAGDRNRG EDNNLDGVGR KEEVKKLVLQ  120
KLHASFGRSD EENFAARLNG VSDVEMFYLT SMYFTFRCDS SRGLGESYIS GKSIWASDLP  180
SCLRHYQQRS FLAGAAGFQT VVFVPVKSGV VEFGSIKSIP EEQNTVDMVK TIFGESNSAQ  240
SKVLPKIFGH ELSLGGTKSC SVNINFSPKV EDDSGFTPDT FDVQTRGTNT IYGNSSNGCR  300
SDDNEAKLFP RLNQMAVGGF NPQTIVSSME IAKDDSSSQP DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYINDLQMKI RVLETEKEVV  420
EKSKHKQLSA TEIDFQARQE DSVVRIGCPL DAHPVSGVIQ AFREHQIVAQ DSNVSTENGK  480
VIHTFSIRTQ GGTAELLKEE LVAALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A9e-11482339192Transcription factor MYC3
4rs9_A9e-11482339192Transcription factor MYC3
4rqw_B9e-11482339192Transcription factor MYC3
4rqw_A9e-11482339192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443887.10.0hypothetical protein CICLE_v10019816mg
RefseqXP_006479569.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A067FM980.0A0A067FM98_CITSI; Uncharacterized protein
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-170bHLH family protein